Publications

All Publications Since 2005

  • 1. Peralta RM, Ahn C, Gillevet PM (2013) Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands. Science of The Total Environment 443: 725-732.
  • 2. Spear GT, Kersh E, Guenthner P, Vishwanathan SA, Gilbert D, et al. (2012) Longitudinal Assessment of Pigtailed Macaque Lower Genital Tract Microbiota by Pyrosequencing Reveals Dissimilarity to the Genital Microbiota of Healthy Humans. AIDS Res Hum Retroviruses 28: 1244-1249. 3. Spear G, Rothaeulser K, Fritts L, Gillevet PM, Miller CJ (2012) In Captive Rhesus Macaques, Cervicovaginal Inflammation Is Common but Not Associated with the Stable Polymicrobial Microbiome. Plos One 7: 1-10.
  • 4. Spear G, Mirmonsef P, Gillevet P, Zariffard MR, Gilbert D, et al. (2012) Current concept of HIV pathogenesis in the female genital tract. Journal of Reproductive Immunology 94: 129-129.
  • 5. Sikaroodi M, Gillevet PM (2012) Quality control in multi-tag pyrosequencing of microbial communities. BioTechniques 53: in press 53: 381-383.
  • 6. Mutlu EA, Gillevet PM, Rangwala H, Sikaroodi M, Naqvi A, et al. (2012) Colonic microbiome is altered in alcoholism. American Journal of Physiology-Gastrointestinal and Liver Physiology 302: G966-G978.
  • 7. Miller CJ, Spear G, Rothaeulser K, Fritts L, Gillevet P, et al. (2012) In captive rhesus macaques, cervicovaginal inflammation is common but not associated with the stable polymicrobial microbiome. Plos One in press.
  • 8. Meres NJ, Ajuzie CC, Sikaroodi M, Vemulapalli M, Shields JD, et al. (2012) Dysbiosis in Epizootic Shell Disease of the American Lobster (Homarus Americanus). Journal of Shellfish Research 31: 463-472.
  • 9. Mehta SD, Green SJ, Maclean I, Hu H, Bailey RC, et al. (2012) Microbial Diversity of Genital Ulcer Disease in Men Enrolled in a Randomized Trial of Male Circumcision in Kisumu, Kenya. Plos One 7.
  • 10. Kakiyama G, Ridlon JM, Hylemon PB, Pandak WM, Gillevet PM, et al. (2012) The Gut Microbiome Modulates Fecal Bile Acid Profile in Patients with Cirrhosis. Journal of Hepatology 56: S51-S51.
  • 11. Hamdan LJ, Sikaroodi M, Gillevet PM (2012) Bacterial Community Composition and Diversity in Methane Charged Sediments Revealed by Multitag Pyrosequencing. Geomicrobiology Journal 29: 340-351.
  • 12. Hamdan LJ, Coffin RB, Sikaroodi M, Greinert J, Treude4 T, et al. (2012) Ocean currents shape the microbiome of Arctic marine sediments. ISME in press: 1-12.
  • 13. Frankenfeld CL, Poudrier JK, Waters NM, Gillevet PM, Xu Y (2012) Dietary Intake Measured from a Self-Administered, Online 24-Hour Recall System Compared with 4-Day Diet Records in an Adult US Population. JOURNAL OF THE ACADEMY OF NUTRITION AND DIETETICS in press: 1-6.
  • 14. Cook GM, Rothenberger JP, Sikaroodi M, Gillevet PM, Peters EC, et al. (2012) A Comparison of Culture-dependent and Culture-independent techniques used to Characterize Bacterial Communities on Healthy and White Plague Type II-Diseased Corals of the Montastraea annularis species complex. Coral Reef Journa; in press.
  • 15. Bajaj JS, Ridlon JM, Hylemon PB, Thacker LR, Heuman DM, et al. (2012) Linkage of Gut Microbiome with Cognition and Inflammation in Hepatic Encephalopathy. Am J Physiol Gastrointest Liver Physiol 302: G168–G175.
  • 16. Bajaj JS, Hylemon PB, Ridlon JM, Heuman DM, Daita K, et al. (2012) Colonic mucosal microbiome differs from stool microbiome in cirrhosis and hepatic encephalopathy and is linked to cognition and inflammation. American Journal of Physiology-Gastrointestinal and Liver Physiology 303: G675-G685.
  • 17. Bajaj JS, Gillevet PM, Patel NR, Ahluwalia V, Ridlon JM, et al. (2012) A longitudinal systems biology analysis of lactulose withdrawal in hepatic encephalopathy. Metabolic Brain Disease 27: 205-215.
  • 18. Bajaj JS, Gillevet PM, Hylemon PB (2012) Methanogenesis in Irritable Bowel Syndrome: A Lot of Hot Air? Digestive Diseases and Sciences 57: 3045-3046.
  • 19. Spear GT, Gilbert D, Landay AL, Zariffard R, French AL, et al. (2011) Pyrosequencing of the Genital Microbiotas of HIV-Seropositive and -Seronegative Women Reveals Lactobacillus iners as the Predominant Lactobacillus Species. Applied and Environmental Microbiology 77: 378-381.
  • 20. Mutlu EA, Keshavarzian A, Couch R, Rangwala H, Sikaroodi M, et al. (2011) Systems Biology Approah to Alcohol-Induced Endotoxemia and Endotoxin-Mediated Inflammation and Tissue Injury. Alcoholism-Clinical and Experimental Research 35: 279A-279A.
  • 21. Mehta S, Maclain I, Baiely R, Moses S, Gillevet P, et al. (2011) Microbial Diversity of Genital Ulcer Disease in Men Enrolled in a Randomised Trial of Male Circumcision in Kisumu, Kenya. Sexually Transmitted Infections 87: A292-A293.
  • 22. Lawrey JD, Diederich P, Nelsen MP, Sikaroodi M, Gillevet PM, et al. (2011) The obligately lichenicolous genus Lichenoconium represents a novel lineage in the Dothideomycetes. Fungal Biology 115: 176-187.
  • 23. Harasewych MG, Sikaroodi M, Gillevet PM (2011) The Delray Beach, Florida, colony of Cerion (Paracerion) tridentatum costellata Pilsbry, 1946 (Gastropoda: Pulmonata: Cerionidae): Evidence for indirect Cuban origins. Nautilus 125: 173-181.
  • 24. Hamdan LJ, Gillevet PM, Pohlman JW, Sikaroodi M, Greinert J, et al. (2011) Diversity and biogeochemical structuring of bacterial communities across the Porangahau ridge accretionary prism, New Zealand. Fems Microbiology Ecology 77: 518-532.
  • 25. Ghannoum MA, Mukherjee PK, Jurevic RJ, Retuerto M, Brown RE, et al. (2011) Metabolomics Reveals Differential Levels of Oral Metabolites in HIV-Infected Patients: Toward Novel Diagnostic Targets. OMICS A Journal of Integrative Biology 15: 1-11.
  • 26. Frankenfeld C, Poudrier J, Waters N, Gillevet P, Xu Y (2011) Diet Quality in Relation to Geographical Life History Factors. American Journal of Epidemiology 173: S34-S34.
  • 27. Dixon E, Clubb C, Pittman S, Ammann L, Rasheed Z, et al. (2011) Solid-Phase Microextraction and the Human Fecal VOC Metabolome. Plos One 6.
  • 28. Diederich P, Lawrey JD, Sikaroodi M, Gillevet PM (2011) A new lichenicolous teleomorph is related to plant pathogens in Laetisaria and Limonomyces (Basidiomycota, Corticiales). Mycologia 103: 525-533.
  • 29. Bokhari H, Anwar M, Mirza HB, Gillevet PM (2011) Evidences of lateral gene transfer between Archaea and pathogenic bacterial genome sequences. Bioinformation 6: ISSN 0973-2063.
  • 30. Bajaj J, Sanyal AJ, Ridlon JM, Hylemon P, Neuman DM, et al. (2011) Linkage of Gut Microbiome with Cognition and Inflammation in Hepatic Encephalopathy. Hepatology 54: 1262A-1262A.
  • 31. Spear GT, Gilbert D, Sikaroodi M, Doyle L, Green L, et al. (2010) Identification of Rhesus Macaque Genital Microbiota by 16S Pyrosequencing Shows Similarities to Human Bacterial Vaginosis: Implications for Use as an Animal Model for HIV Vaginal Infection. Aids Research and Human Retroviruses 26: 193-200.
  • 32. Shannon KM, Mutlu EA, Gillevet PM, Jaglin JA, Keshavarzian A (2010) Dysbiosis in Parkinson’s Disease (PD) – Etiologic Factor? – A Pilot Study. Annals of Neurology 68: S20-S20.
  • 33. Naqvi A, Rangwale H, Keshavarzian A, Gillevet P (2010) Network-Based Modeling of the Human Gut Microbiome. Chemistry & Biodiversity 7: 1040-1050.
  • 34. Naqvi A, Rangwala H, Spear G, Gillevet P (2010) Analysis of Multitag Pyrosequence Data from Human Cervical Lavage Samples. Chemistry & Biodiversity 7: 1076-1085.
  • 35. Gillevet P, Sikaroodi M, Keshavarzian A, Mutlu EA (2010) Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing. Chemistry & Biodiversity 7: 1065-1075.
  • 36. Ghannoum MA, Jurevic RJ, Mukherjee PK, Cui F, Sikaroodi M, et al. (2010) Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals. Plos Pathogens 6: 1-8.
  • 37. Bokhari H, Smith C, Veerendra K, Sivaraman J, Sikaroodi M, et al. (2010) Novel fluorescent protein from Hydnophora rigida possess cyano emission. Biochemical and Biophysical Research Communications 396: 631-636.
  • 38. Bajaj J, McPhail MJ, Neuman DM, Bell D, Gillevet P, et al. (2010) Urinary Magnetic Resonance Spectroscopy in Patients with Hepatic Encephalopathy: Citrate Correlates with Asymmetric Dimethylarginine and Gut Microbial Species and Can Predict Recurrence after Lactulose Discontinuation. Journal of Hepatology 52: S67-S67.
  • 39. Rose DJ, Keshavarzian A, Patterson JA, Venkatachalam M, Gillevet P, et al. (2009) Starch-entrapped microspheres extend in vitro fecal fermentation, increase butyrate production, and influence microbiota pattern. Molecular Nutrition & Food Research 53: S121-S130.
  • 40. Mutlu E, Keshavarzian A, Engen P, Forsyth CB, Sikaroodi M, et al. (2009) Intestinal Dysbiosis: A Possible Mechanism of Alcohol-Induced Endotoxemia and Alcoholic Steatohepatitis in Rats. Alcoholism-Clinical and Experimental Research 33: 1836-1846.
  • 41. Lücking R, Lawrey JD, Sikaroodi M, Gillevet PM, Chaves JL, et al. (2009) Do Lichens Domesticate Photobionts Like Farmers Domesticate Crops? Evidence from a Previously Unrecognized Lineage of Filamentous Cyanobacteria. American Journal of Botany 96: 1409-1418.
  • 42. Litchfield CD, Oren A, Irby A, Sikaroodi M, Gillevet PM (2009) Temporal and Salinity Impacts on the Microbial Diversity at the Eilat, Israel Solar Salt Plant. Global Nest Journal 11: 86-90.
  • 43. Lawrey JD, Lucking R, Sipman HJM, Chaves JL, Redhead SA, et al. (2009) High concentration of basidiolichens in a single family of agaricoid mushrooms (Basidiomycota: Agaricales: Hygrophoraceae). Mycological Research 113: 1154-1171.
  • 44. Gillevet PM, Sikaroodi M, Torzilli AP (2009) Analyzing salt-marsh fungal diversity: comparing ARISA fingerprinting with clone sequencing and pyrosequencing. Fungal Ecology 2: 160-167.
  • 45. Bisson IA, Marra PP, Burtt EH, Sikaroodi M, Gillevet PM (2009) Variation in Plumage Microbiota Depends on Season and Migration. Microbial Ecology 58: 212-220.
  • 46. Ahn C, Gillevet PM, Sikaroodi M, Wolf KL (2009) An assessment of soil bacterial community structure and physicochemistry in two microtopographic locations of a palustrine forested wetland. Wetlands Ecology and Management 17: 397-407.
  • 47. Spear GT, Sikaroodi M, Zariffard MR, Landay AL, French AL, et al. (2008) Comparison of the diversity of the vaginal microbiota in HIV-infected and HIV-uninfected women with or without bacterial vaginosis. Journal of Infectious Diseases 198: 1131-1140.
  • 48. Pesenti PT, Sikaroodi M, Gillevet PM, Sanchez-Porro C, Ventosa A, et al. (2008) Halorubrum californiense sp nov., an extreme archaeal halophile isolated from a crystallizer pond at a solar salt plant in California, USA. International Journal of Systematic and Evolutionary Microbiology 58: 2710-2715.
  • 49. Mutlu EA, Glover SC, Gillevet PM, Llor X, Quander CR, et al. (2008) Bacterial microbiota fingerprints are altered in colon cancer. Gastroenterology 134: A296-A296.
  • 50. Lawrey JD, Diederich P, Sikaroodi M, Gillevet PM (2008) Remarkable nutritional diversity of basidiomycetes in the Corticiales, including a new foliicolous species of Marchandiomyces (Anamorphic Basidiomycota, Corticiaceae) from Australia. American Journal of Botany 95: 816-823.
  • 51. Hamdan LJ, Gillevet PM, Sikaroodi M, Pohlman JW, Plummer RE, et al. (2008) Geomicrobial characterization of gas hydrate-bearing sediments along the mid-Chilean margin. Fems Microbiology Ecology 65: 15-30.
  • 52. Ertz D, Lawrey JD, Sikaroodi M, Gillevet PM, Fischer E, et al. (2008) A New Lineage of Lichenized Basidiomycetes Inferred from a Two-Gene Phylogeny: The Lepidostromataceae with Three Species from the Tropics. American Journal of Botany 95: 1548-1556.
  • 53. Mills DK, Entry JA, Gillevet PM, Mathee K (2007) Assessing microbial community diversity using amplicon length heterogeneity polymerase chain reaction. Soil Science Society of America Journal 71: 572-578.
  • 54. Komanduri S, Gillevet PM, Sikaroodi M, Mutlu E, Keshavarzian A (2007) Dysbiosis in pouchitis: Evidence of unique microfloral patterns in pouch inflammation. Clinical Gastroenterology and Hepatology 5: 352-360.
  • 55. Bisson IA, Marra PP, Burtt EH, Sikaroodi M, Gillevet PM (2007) A molecular comparison of plumage and soil bacteria across biogeographic, ecological, and taxonomic scales. Microbial Ecology 54: 65-81.
  • 56. Ahn C, Gillevet PM, Sikaroodi M (2007) Molecular characterization of microbial communities in treatment microcosm wetlands as influenced by macrophytes and phosphorus loading. Ecological Indicators 7: 852-863.
  • 57. Ahn C, Gillevet PM, Sikaroodi M. Assessing Microbial Community Structure Using LH-PCR in Treatment Microcosm Wetlands.; 2006 September 23-29, 2006; Lisbon, Portugal. pp. 1939-1947.
  • 58. Yang CY, Mills D, Mathee K, Wang Y, Jayachandran K, et al. (2006) An ecoinformatics tool for microbial community studies: Supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. Journal of Microbiological Methods 65: 49-62.
  • 59. Torzilli AP, Sikaroodi M, Chalkley D, Gillevet PM (2006) A comparison of fungal communities from four salt marsh plants using automated ribosomal intergenic spacer analysis (ARISA). Mycologia 98: 690-698.
  • 60. Mutlu EA, Gillevet P, Sikaroodi M, Kwasny M, Keshavarzian A (2006) Bacterial diversity remains high in inflammatory bowel disease. American Journal of Gastroenterology 101: S467-S467.
  • 61. Mutlu EA, Gillevet P, Sikaroodi M, Komanduri S, Keshavarzian A (2006) There is a shift of luminal flora to the mucosal surface in inflammatory bowel disease. American Journal of Gastroenterology 101: S467-S468.
  • 62. Mills DK, Entry JA, Voss JD, Gillevet PM, Mathee K (2006) An assessment of the hypervariable domains of the 16S rRNA genes for their value in determining microbial community diversity: the paradox of traditional ecological indices. Fems Microbiology Ecology 57: 496-503.
  • 63. Litchfield CD, Sikaroodi M, Gillevet PM (2006) Characterization of natural communities of halophilic microorganisms. Extremophiles. pp. 513-+.
  • 64. Gillevet PM (2006) Multitag Sequencing and Ecogenomic Analysis. In: Application U, editor: BioSpherex LLC.
  • 65. Webb SR, Garman GC, McIninch SP, Nerad TA, Peglar MT, et al. (2005) Etiology of ulcerative lesions of Atlantic menhaden (Brevoortia tyrannus) from James River, Virginia. Parasitology Research 97: 358-366.
  • 66. Mutlu E, Gillevet PM, Shaikh M, Keshavarzian A (2005) Microflora in inflammatory bowel disease. Gastroenterology 128: A506-A507.
  • 67. Mutlu E, Gillevet P, Shikaroodi M, Licciardi N, Keshavarzian A (2005) Colonic microflora in Crohn’s is different than normals. American Journal of Gastroenterology 100: S320-S320. 

Microbiome

  • 1. Spear G, Rothaeulser K, Fritts L, Gillevet PM, Miller CJ (2012) In Captive Rhesus Macaques, Cervicovaginal Inflammation Is Common but Not Associated with the Stable Polymicrobial Microbiome. Plos One 7: 1-10.
  • 2. Mutlu EA, Gillevet PM, Rangwala H, Sikaroodi M, Naqvi A, et al. (2012) Colonic microbiome is altered in alcoholism. American Journal of Physiology-Gastrointestinal and Liver Physiology 302: G966-G978.
  • 3. Miller CJ, Spear G, Rothaeulser K, Fritts L, Gillevet P, et al. (2012) In captive rhesus macaques, cervicovaginal inflammation is common but not associated with the stable polymicrobial microbiome. Plos One in press.
  • 4. Bajaj JS, Gillevet PM, Patel NR, Ahluwalia V, Ridlon JM, et al. (2012) A longitudinal systems biology analysis of lactulose withdrawal in hepatic encephalopathy. Metabolic Brain Disease 27: 205-215.
  • 5. Spear GT, Gilbert D, Landay AL, Zariffard R, French AL, et al. (2011) Pyrosequencing of the Genital Microbiotas of HIV-Seropositive and -Seronegative Women Reveals Lactobacillus iners as the Predominant Lactobacillus Species. Applied and Environmental Microbiology 77: 378-381.
  • 6. Dixon E, Clubb C, Pittman S, Ammann L, Rasheed Z, et al. (2011) Solid-Phase Microextraction and the Human Fecal VOC Metabolome. Plos One 6.
  • 7. Spear GT, Gilbert D, Sikaroodi M, Doyle L, Green L, et al. (2010) Identification of Rhesus Macaque Genital Microbiota by 16S Pyrosequencing Shows Similarities to Human Bacterial Vaginosis: Implications for Use as an Animal Model for HIV Vaginal Infection. Aids Research and Human Retroviruses 26: 193-200.
  • 8. Naqvi A, Rangwale H, Keshavarzian A, Gillevet P (2010) Network-Based Modeling of the Human Gut Microbiome. Chemistry & Biodiversity 7: 1040-1050.
  • 9. Naqvi A, Rangwala H, Spear G, Gillevet P (2010) Analysis of Multitag Pyrosequence Data from Human Cervical Lavage Samples. Chemistry & Biodiversity 7: 1076-1085.
  • 10. Gillevet P, Sikaroodi M, Keshavarzian A, Mutlu EA (2010) Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing. Chemistry & Biodiversity 7: 1065-1075.
  • 11. Ghannoum MA, Jurevic RJ, Mukherjee PK, Cui F, Sikaroodi M, et al. (2010) Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals. Plos Pathogens 6: 1-8.
  • 12. Rose DJ, Keshavarzian A, Patterson JA, Venkatachalam M, Gillevet P, et al. (2009) Starch-entrapped microspheres extend in vitro fecal fermentation, increase butyrate production, and influence microbiota pattern. Molecular Nutrition & Food Research 53: S121-S130.
  • 13. Mutlu E, Keshavarzian A, Engen P, Forsyth CB, Sikaroodi M, et al. (2009) Intestinal Dysbiosis: A Possible Mechanism of Alcohol-Induced Endotoxemia and Alcoholic Steatohepatitis in Rats. Alcoholism-Clinical and Experimental Research 33: 1836-1846.
  • 14. Spear GT, Sikaroodi M, Zariffard MR, Landay AL, French AL, et al. (2008) Comparison of the diversity of the vaginal microbiota in HIV-infected and HIV-uninfected women with or without bacterial vaginosis. Journal of Infectious Diseases 198: 1131-1140.
  • 15. Komanduri S, Gillevet PM, Sikaroodi M, Mutlu E, Keshavarzian A (2007) Dysbiosis in pouchitis: Evidence of unique microfloral patterns in pouch inflammation. Clinical Gastroenterology and Hepatology 5: 352-360.

Methodology

  • 1. Sikaroodi M, Gillevet PM (2012) Quality control in multi-tag pyrosequencing of microbial communities. BioTechniques 53: in press 53: 381-383.
  • 2. Mills DK, Entry JA, Gillevet PM, Mathee K (2007) Assessing microbial community diversity using amplicon length heterogeneity polymerase chain reaction. Soil Science Society of America Journal 71: 572-578.
  • 3. Mills DK, Entry JA, Voss JD, Gillevet PM, Mathee K (2006) An assessment of the hypervariable domains of the 16S rRNA genes for their value in determining microbial community diversity: the paradox of traditional ecological indices. Fems Microbiology Ecology 57: 496-503.
  • Bioinformatics

  • 1. Naqvi A, Rangwale H, Keshavarzian A, Gillevet P (2010) Network-Based Modeling of the Human Gut Microbiome. Chemistry & Biodiversity 7: 1040-1050.
  • 2. Naqvi A, Rangwala H, Spear G, Gillevet P (2010) Analysis of Multitag Pyrosequence Data from Human Cervical Lavage Samples. Chemistry & Biodiversity 7: 1076-1085.
  • 3. Yang CY, Mills D, Mathee K, Wang Y, Jayachandran K, et al. (2006) An ecoinformatics tool for microbial community studies: Supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. Journal of Microbiological Methods 65: 49-62.
  • Molecular Ecology and Evolution

  • 1. Peralta RM, Ahn C, Gillevet PM (2013) Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands. Science of The Total Environment 443: 725-732.
  • 2. Meres NJ, Ajuzie CC, Sikaroodi M, Vemulapalli M, Shields JD, et al. (2012) Dysbiosis in Epizootic Shell Disease of the American Lobster (Homarus Americanus). Journal of Shellfish Research 31: 463-472.
  • 3. Hamdan LJ, Sikaroodi M, Gillevet PM (2012) Bacterial Community Composition and Diversity in Methane Charged Sediments Revealed by Multitag Pyrosequencing. Geomicrobiology Journal 29: 340-351.
  • 4. Hamdan LJ, Coffin RB, Sikaroodi M, Greinert J, Treude4 T, et al. (2012) Ocean currents shape the microbiome of Arctic marine sediments. ISME in press: 1-12.
  • 5. Cook GM, Rothenberger JP, Sikaroodi M, Gillevet PM, Peters EC, et al. (2012) A Comparison of Culture-dependent and Culture-independent techniques used to Characterize Bacterial Communities on Healthy and White Plague Type II-Diseased Corals of the Montastraea annularis species complex. Coral Reef Journa; in press.
  • 6. Lawrey JD, Diederich P, Nelsen MP, Sikaroodi M, Gillevet PM, et al. (2011) The obligately lichenicolous genus Lichenoconium represents a novel lineage in the Dothideomycetes. Fungal Biology 115: 176-187.
  • 7. Harasewych MG, Sikaroodi M, Gillevet PM (2011) The Delray Beach, Florida, colony of Cerion (Paracerion) tridentatum costellata Pilsbry, 1946 (Gastropoda: Pulmonata: Cerionidae): Evidence for indirect Cuban origins. Nautilus 125: 173-181.
  • 8. Hamdan LJ, Gillevet PM, Pohlman JW, Sikaroodi M, Greinert J, et al. (2011) Diversity and biogeochemical structuring of bacterial communities across the Porangahau ridge accretionary prism, New Zealand. Fems Microbiology Ecology 77: 518-532.
  • 9. Diederich P, Lawrey JD, Sikaroodi M, Gillevet PM (2011) A new lichenicolous teleomorph is related to plant pathogens in Laetisaria and Limonomyces (Basidiomycota, Corticiales). Mycologia 103: 525-533.
  • 10. Bokhari H, Smith C, Veerendra K, Sivaraman J, Sikaroodi M, et al. (2010) Novel fluorescent protein from Hydnophora rigida possess cyano emission. Biochemical and Biophysical Research Communications 396: 631-636.
  • 11. Lücking R, Lawrey JD, Sikaroodi M, Gillevet PM, Chaves JL, et al. (2009) Do Lichens Domesticate Photobionts Like Farmers Domesticate Crops? Evidence from a Previously Unrecognized Lineage of Filamentous Cyanobacteria. American Journal of Botany 96: 1409-1418.
  • 12. Litchfield CD, Oren A, Irby A, Sikaroodi M, Gillevet PM (2009) Temporal and Salinity Impacts on the Microbial Diversity at the Eilat, Israel Solar Salt Plant. Global Nest Journal 11: 86-90.
  • 13. Lawrey JD, Lucking R, Sipman HJM, Chaves JL, Redhead SA, et al. (2009) High concentration of basidiolichens in a single family of agaricoid mushrooms (Basidiomycota: Agaricales: Hygrophoraceae). Mycological Research 113: 1154-1171.
  • 14. Gillevet PM, Sikaroodi M, Torzilli AP (2009) Analyzing salt-marsh fungal diversity: comparing ARISA fingerprinting with clone sequencing and pyrosequencing. Fungal Ecology 2: 160-167.
  • 15. Bisson IA, Marra PP, Burtt EH, Sikaroodi M, Gillevet PM (2009) Variation in Plumage Microbiota Depends on Season and Migration. Microbial Ecology 58: 212-220.
  • 16. Ahn C, Gillevet PM, Sikaroodi M, Wolf KL (2009) An assessment of soil bacterial community structure and physicochemistry in two microtopographic locations of a palustrine forested wetland. Wetlands Ecology and Management 17: 397-407.
  • 17. Pesenti PT, Sikaroodi M, Gillevet PM, Sanchez-Porro C, Ventosa A, et al. (2008) Halorubrum californiense sp nov., an extreme archaeal halophile isolated from a crystallizer pond at a solar salt plant in California, USA. International Journal of Systematic and Evolutionary Microbiology 58: 2710-2715.
  • 18. Lawrey JD, Diederich P, Sikaroodi M, Gillevet PM (2008) Remarkable nutritional diversity of basidiomycetes in the Corticiales, including a new foliicolous species of Marchandiomyces (Anamorphic Basidiomycota, Corticiaceae) from Australia. American Journal of Botany 95: 816-823.
  • 19. Hamdan LJ, Gillevet PM, Sikaroodi M, Pohlman JW, Plummer RE, et al. (2008) Geomicrobial characterization of gas hydrate-bearing sediments along the mid-Chilean margin. Fems Microbiology Ecology 65: 15-30.
  • 20. Ertz D, Lawrey JD, Sikaroodi M, Gillevet PM, Fischer E, et al. (2008) A New Lineage of Lichenized Basidiomycetes Inferred from a Two-Gene Phylogeny: The Lepidostromataceae with Three Species from the Tropics. American Journal of Botany 95: 1548-1556.
  • 21. Bisson IA, Marra PP, Burtt EH, Sikaroodi M, Gillevet PM (2007) A molecular comparison of plumage and soil bacteria across biogeographic, ecological, and taxonomic scales. Microbial Ecology 54: 65-81.
  • 22. Ahn C, Gillevet PM, Sikaroodi M (2007) Molecular characterization of microbial communities in treatment microcosm wetlands as influenced by macrophytes and phosphorus loading. Ecological Indicators 7: 852-863.
  • 23. Torzilli AP, Sikaroodi M, Chalkley D, Gillevet PM (2006) A comparison of fungal communities from four salt marsh plants using automated ribosomal intergenic spacer analysis (ARISA). Mycologia 98: 690-698.
  • 24. Litchfield CD, Sikaroodi M, Gillevet PM (2006) Characterization of natural communities of halophilic microorganisms. Extremophiles. pp. 513-+.